Add analysis script

1 files changed, 164 insertions, 0 deletions

diff --git a/g5k/logs/analysis.org b/g5k/logs/analysis.org
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index 0000000..a476cb2
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+
+
+
+
+* Logs Analysis
+** R Scripts
+*** Generate all plots script
+    #+BEGIN_SRC R
+      #<<RUtils>>
+
+
+      energy=loadEnergy
+    #+END_SRC
+    
+
+*** R Utils
+    RUtils is intended to load logs (data.csv) and providing
+    simple plot function for them.
+
+    #+NAME: RUtils
+    #+BEGIN_SRC R :eval never
+      library("tidyverse")
+
+      # Fell free to update the following
+      labels=c(nbNodes="Number of nodes",sensorsNumber="Number of sensors",totalEnergy="Total Energy (J)",
+        nbHop="Number of hop (AP to Cloud)", linksBandwidth="Links Bandwidth (Mbps)", avgDelay="Average Application Delay (s)",
+        linksLatency="Links Latency (ms)", sensorsSendInterval="Sensors Send Interval (s)", positionSeed="Position Seed",
+        sensorsEnergy="Sensors Wifi Energy Consumption (J)", networkEnergy="Network Energy Consumption (J)")
+
+      # Load Data
+      data=read_csv("logs/data.csv")
+
+      loadData=function(path){
+        data=read_csv(path)
+        data%>%mutate(time=ts-min(ts))
+      }
+
+      # Get label according to varName
+      getLabel=function(varName){
+        if(is.na(labels[varName])){
+          return(varName)
+        }
+        return(labels[varName])
+      }
+    #+END_SRC
+
+** Plots -> PDF
+   Merge all plots in plots/ folder into a pdf file.
+   #+NAME: plotToPDF
+   #+BEGIN_SRC bash :results output :noweb yes
+     orgFile="plots/plots.org"
+     <<singleRun>> # To get all default arguments
+
+     # Write helper function
+     function write {
+         echo "$1" >> $orgFile
+     }
+
+     echo "#+TITLE: Analysis" > $orgFile
+     write "#+LATEX_HEADER: \usepackage{fullpage}"
+     write "#+OPTIONS: toc:nil"
+     # Default arguments
+     write '\begin{center}'
+     write '\begin{tabular}{lr}'
+     write 'Parameters & Values\\'
+     write '\hline'
+     write "sensorsPktSize & ${sensorsPktSize} bytes\\\\"
+     write "sensorsSendInterval & ${sensorsSendInterval}s\\\\"
+     write "sensorsNumber & ${sensorsNumber}\\\\"
+     write "nbHop & ${nbHop}\\\\"
+     write "linksBandwidth & ${linksBandwidth}Mbps\\\\"
+     write "linksLatency & ${linksLatency}ms\\\\"
+     write '\end{tabular}'
+     write '\newline'
+     write '\end{center}'
+
+     for plot in $(find plots/ -type f -name "*.png")
+     do
+         write "\includegraphics[width=0.5\linewidth]{$(basename ${plot})}"
+     done
+
+     # Export to pdf
+     emacs $orgFile --batch -f org-latex-export-to-pdf --kill  
+   #+END_SRC
+
+   #+RESULTS:
+
+
+ 
+** CSVs -> CSV
+
+   #+NAME: mergeCSV
+   #+BEGIN_SRC sh :results output
+     #!/bin/bash
+
+     whichLog="first-try"
+
+
+     logFile="$(dirname $(readlink -f $0))"/$whichLog/simLogs.txt
+     dataFile=$(dirname "$logFile")/data.csv
+
+
+     getValue () {
+         line=$(echo "$1" | grep "Simulation para"|sed "s/Simulation parameters: //g")
+         key=$2
+         echo "$line"|awk 'BEGIN{RS=" ";FS=":"}"'$key'"==$1{gsub("\n","",$0);print $2}'
+     }
+
+     ##### Add extract info to energy #####
+     IFS=$'\n'
+     for cmd in $(cat $logFile|grep "Simulation parameters")
+     do
+         nodeName=$(getValue $cmd serverNodeName)
+         from=$(getValue $cmd simStart)
+         to=$(getValue $cmd simEnd)
+         vmSize=$(getValue $cmd vmSize)
+         nbSensors=$(getValue $cmd nbSensors)
+         simKey=$(getValue $cmd simKey)
+         csvFile="$whichLog/${simKey}_${vmSize}VMSIZE_${nbSensors}NBSENSORS_${from}${to}.csv"
+         tmpFile=${csvFile}_tmp
+         echo ts,energy,simKey,vmSize,nbSensors > $tmpFile
+         tail -n+2 ${csvFile} | awk '{print $0",'$simKey','$vmSize','$nbSensors'"}' >> $tmpFile
+     done
+
+
+     ##### File dataFile #####
+     echo ts,energy,simKey,vmSize,nbSensors > $dataFile
+     for tmpFile in $(find ${whichLog}/*_tmp -type f)
+     do
+         tail -n+2 $tmpFile >> $dataFile
+         rm $tmpFile # Pay attention to this line :D
+     done
+   #+END_SRC
+
+   #+RESULTS:
+
+** Custom Plots
+
+   #+NAME: ssiNet
+   #+BEGIN_SRC R :noweb yes :results graphics :file plots/sensorsSendInterval-net.png
+     <<RUtils>>
+
+     data%>%filter(simKey=="SENDINTERVAL",sensorsNumber==20) %>% ggplot(aes(x=sensorsSendInterval,y=networkEnergy))+xlab(getLabel("sensorsSendInterval"))+ylab(getLabel("networkEnergy"))+
+     geom_line()+labs(title="For 20 sensors")
+     ggsave("plots/sensorsSendInterval-net.png",dpi=80)
+   #+END_SRC
+
+   #+RESULTS:
+   [[file:plots/sensorsSendInterval-net.png]]
+
+   
+   #+NAME: ssiWifi
+   #+BEGIN_SRC R :noweb yes :results graphics :file plots/sensorsSendInterval-wifi.png
+     <<RUtils>>
+     data%>%filter(simKey=="SENDINTERVAL",sensorsNumber==20) %>% ggplot(aes(x=sensorsSendInterval,y=sensorsEnergy))+xlab(getLabel("sensorsSendInterval"))+ylab(getLabel("sensorsEnergy"))+
+     geom_line() +     geom_line()+labs(title="For 20 sensors")
+     ggsave("plots/sensorsSendInterval-wifi.png",dpi=80)
+   #+END_SRC
+
+   #+RESULTS: ssiWifi
+   [[file:plots/sensorsSendInterval-wifi.png]]
+
+   #+RESULTS:
+   [[file:plots/sensorsSendInterval.png]]