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Diffstat (limited to 'analysis/offline.R')
| -rw-r--r-- | analysis/offline.R | 214 |
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diff --git a/analysis/offline.R b/analysis/offline.R new file mode 100644 index 0000000..da444d8 --- /dev/null +++ b/analysis/offline.R @@ -0,0 +1,214 @@ +library("tidyverse") +options(dplyr.summarise.inform = FALSE) +library("class") +library("rpart") +library("rpart.plot") +library("viridis") +library("MLmetrics") + +## Simulation Parameters: +## simkey {baseline,extended,hint,hintandextended} +## wireless {lora,nbiot} +## wakeupfor {60s,180s} +## seed [1,200] +## node on[0,12] +## isSender {0,1} +## dataSize {1MB} + +## Metrics: +## energy [0,+inf) +## nDataRcv [0,+inf) + +nseed=200 +nwakeupfor=2 +nwireless=2 +nsimkey=4 +nsimulations=nseed*nwakeupfor*nwireless*nsimkey # Must be 3200 + +## Load data +data=suppressMessages(read_csv("../CCGRID2022.csv"))%>%distinct() # Note that in the data experiment wireless=="lora",seed==1,wakeupfor==60,simkey=="baseline" is present 2 times in the CSV file +data_seed=data%>%group_by(simkey,wireless,wakeupfor,seed)%>%summarize(energy=sum(energy),coverage=sum(nDataRcv))%>% + mutate(efficiency=energy/coverage)%>% + ungroup() + + +F1_Score2=function(truth, pred){ + result=sapply(c("baseline","extended","hint","hintandextended"),function(c){ + cur_truth=truth[truth==c] + cur_pred=pred[truth==c] + col=paste0("f1_",c) + score=F1_Score(cur_truth,cur_pred) + if(is.nan(score)){score=0} + list(tibble(!!col:=score)) + }) + do.call("cbind",result) +} + +build_models=function(ignore_hint=TRUE){ + ## Prepare data for traning + set.seed(1) # Reproducibility + wireless_map=c("lora"=1,"nbiot"=2) + data_ml=data_seed%>%select(-efficiency,-seed)%>%mutate(wireless=wireless_map[data_seed$wireless]) + if(ignore_hint){ + data_ml=data_ml%>%filter(simkey!="hint") + } + train_set=data_ml%>%sample_frac(0.8) # 80% of the data + test_set=data_ml%>%suppressMessages(anti_join(train_set)) # 20% of the data + + ## KNN predict function + knn_fn=function(inputs){ + as.vector(knn(train=train_set%>%select(-simkey),test=inputs%>%select(-simkey),cl=train_set$simkey,k=10)) + } + + ## Decision tree + tree=rpart( + simkey ~ wireless + wakeupfor + energy + coverage, + data=train_set, + method="class", + minsplit=60, + minbucket=1) + ## Tree predict function + tree_fn=function(inputs){ + as.vector(predict(tree,newdata=inputs%>%select(-simkey),type="class")) + } + + ## Build models + models=list(predict_knn=knn_fn,predict_tree=tree_fn) + + ## Computer performances + perfs=sapply(seq(1,20),function(i){ + ## Prepare data for traning + set.seed(1) # Reproducibility + wireless_map=c("lora"=1,"nbiot"=2) + data_ml=data_seed%>%select(-efficiency,-seed)%>%mutate(wireless=wireless_map[data_seed$wireless]) + if(ignore_hint){ + data_ml=data_ml%>%filter(simkey!="hint") + } + train_set=data_ml%>%sample_frac(0.8) # 80% of the data + test_set=data_ml%>%suppressMessages(anti_join(train_set)) # 20% of the data + + ## KNN + knn_predictions=as.vector(knn(train=train_set%>%select(-simkey),test=test_set%>%select(-simkey),cl=train_set$simkey,k=10)) + ## Decision tree + tree=rpart( + simkey ~ wireless + wakeupfor + energy + coverage, + data=train_set, + method="class", + minsplit=60, + minbucket=1) + tree_predictions=as.vector(predict(tree,newdata=test_set%>%select(-simkey),type="class")) + + ## Prefs + f1_knn=F1_Score2(test_set$simkey,knn_predictions) + f1_tree=F1_Score2(test_set$simkey,tree_predictions) + accuracy_knn=sum(test_set$simkey==knn_predictions)/length(test_set$simkey) + accuracy_tree=sum(test_set$simkey==tree_predictions)/length(test_set$simkey) + list(cbind(tibble(model=c("knn","tree")),rbind(f1_knn,f1_tree),tibble(accuracy=c(accuracy_knn,accuracy_tree)))) + }) + perfs=do.call("rbind",perfs)%>%mutate_if(is.numeric, ~round(.,digits=2)) + perfs=perfs%>%group_by(model)%>%summarize( + f1_baseline=mean(f1_baseline), + f1_hint=mean(f1_hint), + f1_extended=mean(f1_extended), + f1_hintandextended=mean(f1_hintandextended), + accuracy=mean(accuracy)) + write.csv(perfs,paste0("figures/f1_scores_offline_ignoreHINT",ignore_hint,".csv"),quote=FALSE,row.names=FALSE) + + ## Return models + models +} + +generate_inputs=function(ignore_hint=FALSE) { + ## Prepare data for traning + set.seed(1) # Reproducibility + wireless_map=c("lora"=1,"nbiot"=2) + data_ml=data_seed%>%select(-efficiency,-seed)%>%mutate(wireless=wireless_map[data_seed$wireless]) + if(ignore_hint){ + data_ml=data_ml%>%filter(simkey!="hint") + } + train_set=data_ml%>%sample_frac(0.8) # 80% of the data + test_set=data_ml%>%anti_join(train_set) # 20% of the data + + ## KNN training + knn_predictions=knn(train=train_set%>%select(-simkey),test=test_set%>%select(-simkey),cl=train_set$simkey,k=10) + ## KNN analysis + knn_cont_table=table(knn_predictions,test_set$simkey) + knn_accuracy=round((sum(diag(knn_cont_table)/sum(rowSums(knn_cont_table))))*100) + knn_prop_table=round(prop.table(knn_cont_table),digits=2) + + ## Decision tree + tree=rpart( + simkey ~ wireless + wakeupfor + energy + coverage, + data=train_set, + method="class", + minsplit=60, + minbucket=1) + tree_predictions=predict(tree,newdata=test_set%>%select(-simkey),type="class") + tree_cont_table=table(tree_predictions,test_set$simkey) + tree_accuracy=(sum(diag(tree_cont_table)/sum(rowSums(tree_cont_table)))) + tree_prop_table=round(prop.table(tree_cont_table),digits=2) + + ## Elbow plot + elbow_data=lapply(seq(1,10),function(kvalue){ + knn_predictions=knn(train=train_set%>%select(-simkey),test=test_set%>%select(-simkey),cl=train_set$simkey,k=kvalue) + ## KNN analysis + knn_cont_table=table(knn_predictions,test_set$simkey) + knn_accuracy=(sum(diag(knn_cont_table)/sum(rowSums(knn_cont_table)))) + knn_prop_table=round(prop.table(knn_cont_table),digits=2) + tibble(k=kvalue,accuracy=knn_accuracy) + }) + elbow_data=do.call("rbind",elbow_data) + ggplot(data=elbow_data,aes(k,accuracy))+geom_point()+geom_line()+ggtitle(paste("K-elbow for with NoHint to",as.character(ignore_hint)))+ylim(c(0,1)) + ggsave(paste0("figures/knn_elbow_NoHintIs",as.character(ignore_hint),".pdf")) + + ## Prints + print(paste0("Accuracy: KNN=",knn_accuracy,"% CART=",tree_accuracy,"%")) + pdf(paste0("figures/tree_",as.character(ignore_hint),".pdf")) + tree_plot=rpart.plot(tree,box.palette=as.list(viridis::viridis(4,begin=0.48)),tweak=1.111) + silent_call=dev.off() + ## Notes: KNN accuracy jump to 76% and CART to 80% accuracy without the hint policy + + ## Generate simulation inputs + inputs=tibble( + wakeupfor = c(60,180,60,180), + wireless = c("lora", "lora", "nbiot", "nbiot")) + constraints=apply(inputs,1,function(row){ + wi=row["wireless"] + wa=as.numeric(row["wakeupfor"]) + ## First extract energy/coverage boundaries + min_energy=min((data_seed%>%filter(wireless==wi,wakeupfor==wa))$energy) + max_energy=max((data_seed%>%filter(wireless==wi,wakeupfor==wa))$energy) + min_coverage=min((data_seed%>%filter(wireless==wi,wakeupfor==wa))$coverage) + max_coverage=max((data_seed%>%filter(wireless==wi,wakeupfor==wa))$coverage) + ## Generate random points (10 per scenarios) + n=100 + current_inputs=tibble( + wireless=rep(wi,n), + wakeupfor=rep(wa,n), + energy_constraint=runif(n,min_energy,max_energy), + coverage_constraint=round(runif(n,min_coverage,max_coverage))) + predictions_knn=knn(train=train_set%>%select(-simkey),test=current_inputs%>% + rename(energy=energy_constraint,coverage=coverage_constraint)%>% + mutate(wireless=wireless_map[wireless]),cl=train_set$simkey,k=10) + predictions_tree=predict(tree,newdata=current_inputs%>% + rename(energy=energy_constraint,coverage=coverage_constraint)%>% + mutate(wireless=wireless_map[wireless]),type="class") + knn_final=tibble(cbind(current_inputs,tibble(simkey=predictions_knn,model="knn"))) + tree_final=tibble(cbind(current_inputs,tibble(simkey=predictions_tree,model="tree"))) + rbind(knn_final,tree_final) + }) + inputs=do.call("rbind",constraints)%>%distinct() + ## Dimension Energy/Coverage + ggplot(data_seed%>%mutate(wakeupfor=as.character(wakeupfor)), + aes(coverage,energy,color=simkey))+geom_point()+ + geom_point(data=inputs%>%mutate(wakeupfor=as.character(wakeupfor)),aes(coverage_constraint,energy_constraint),size=3,pch=5)+ + ggtitle("Dimension Energy/Coverage")+xlab("Coverage")+ylab("Sum of nodes energy consumption (J)")+ + facet_wrap(~wakeupfor+wireless,scale="free") + ggsave(paste0("figures/random_inputs_NoHintIs",as.character(ignore_hint),".pdf"),width=15) + write.csv(inputs,paste0("../inputs_NoHintIs",as.character(ignore_hint),".csv"),row.names=FALSE, quote=FALSE) + +} + +## Generate inputs +generate_inputs(FALSE) +generate_inputs(TRUE) |
